PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00642.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 350aa    MW: 39360.8 Da    PI: 4.6916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00642.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-19112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r ++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  Rsa1.0_00642.1_g00015.1 112 QYRGIRLRP-WGKWAAEIRDPKK---GSREWLGTFDTAEEAARAYDAAARRIRG 161
                              69*******.**********954...39***********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.68E-16112170No hitNo description
SuperFamilySSF541715.1E-22112170IPR016177DNA-binding domain
SMARTSM003802.1E-35112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-32112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.933112169IPR001471AP2/ERF domain
PfamPF008473.6E-12113161IPR001471AP2/ERF domain
PRINTSPR003671.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAIISDF IPPPKSRRVT SEFIWPDPKK KSKRRSSFFD LDDEFEADFK GFKDDDDYSS  60
FDCEDVKKPF VFTAPTKLVA SRPTTLATTG SVSCKKTIES DEKSGKRKRK NQYRGIRLRP  120
WGKWAAEIRD PKKGSREWLG TFDTAEEAAR AYDAAARRIR GDKAKVNFPE EKMVPTGKTS  180
NLKKPVAKPN QTVALVQQPT AHLSQYCNNS FGDLSFIEEK PQMYNNQFFD VGQYFSSDQG  240
SDSFDCSEFG WSDHGPKTPP EISSMLVNNN QATTFAEETN AAKKVKLNSE DETSNNDDLM  300
AYLDNAMWET PLEVEDMLGV DAAGVTQEEE NPMELWSLDD INSMLDGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892531e-114AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135370.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like isoform X1
SwissprotQ9LUM41e-153RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLM4CBG10.0M4CBG1_BRARP; Uncharacterized protein
STRINGBra001541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-142related to AP2 2